ETE is a python programming toolkit that assists in the automated manipulation, analysis and visualization of phylogenetic trees.
EMBL, Heidelberg
Joined June 2011
- Tweets147
- Following32
- Followers638
- Likes30
The ETE toolkit retweeted
One of the coolest features of #TreeProfiler IMO, is its ability to automatically compute consensus/summary information for internal nodes, which integrates seamlessly with the new interactive zooming and auto-colapsing features of the #ete4 tree visualization engine. @deng_ziqi
The ETE toolkit retweeted
Another step in our goal to build a phylogenomics framework that works well with large datasets: TreeProfiler, a handy tool by @deng_ziqi that can map/profile any kind of data against huge trees.
Tree + TSV file = auto viz with @etetoolkit v4.0
biorxiv.org/content/10.1101/…
The ETE toolkit retweeted
smooth zooming, auto-scaling branch lengths, minimap navigation, topology manipulation, rect & circ views, permalinks to scene region, search..
Next major steps:merging with @etetoolkit 's viz grammar for programmatic use & seq.alg support. @jordiburcas @cziscience @CBGP_Madrid
The ETE toolkit retweeted
Interactive huge tree visualization in @etetoolkit getting closer. Check out our current online demo:
treeview.etetoolkit.org
Navigating @ace_gtdb bact tree and complete @NCBI Taxonomy is now possible!
Awesome work by @jordiburcas w/ the support of @cziscience @CBGP_Madrid
The ETE toolkit retweeted
Exciting tutorial "Reconstruction, analysis, and visualization of #phylogenomic data with the @ETEtoolkit" to be held in the New Trends in Bioinformatics by ECCB.
Register to the #ECCB2020 and have the opportunity to join this tutorial! 👇
We got a full day tutorial accepted on ETE Toolkit at @eccb2020, which has been transformed in a virtual 3h tutorial. We will try to touch all major features with a bunch real examples. Only intermediate python level required. Registration should be open
eccb2020.info/ntbt06-reconst…
The ETE toolkit retweeted
really excited to see this... well deserved! We have been using @etetoolkit for rendering trees from IQ-TREE web server
#NewsCBGP | CBGP team awarded Chan Zuckerberg grant to support scientific software for phylogenomic analysis
🇪🇸 - cbgp.upm.es/index.php/es/?op…
🇬🇧 - cbgp.upm.es/index.php/en/?op…
#somosUPM
The ETE toolkit retweeted
#NewsCBGP | CBGP team awarded Chan Zuckerberg grant to support scientific software for phylogenomic analysis
🇪🇸 - cbgp.upm.es/index.php/es/?op…
🇬🇧 - cbgp.upm.es/index.php/en/?op…
#somosUPM
The ETE toolkit retweeted
After more than a decade developing & maintaining ETE, getting the recognition of essential software in science by @cziscience is making everyone in the @etetoolkit team a bit happier :) @fransua_serra @deng_ziqi @renato_alvs @anahernandezpl1 @CBGP_Madrid @La_UPM @INIA_es & more
The ETE toolkit retweeted
I am very glad to announce that we have been awarded with a grant from @cziscience to support the development of @etetoolkit. This will boost the release of a new version focused on better tree comparison methods and large tree visualization. @CBGP_Madrid 1/2
The ETE toolkit retweeted
thanks for this summary thread @yoyehudi !
The bigger the data get, the harder it is to visualise - often we end up with a spaghetti hairball. @jhcepas is sharing @etetoolkit with #biovis, to show programattic visualisations of huuuge tree data in python 🐍 👍🏽🌳 #ISMBECCB2019 #ismbeccb
The ETE toolkit retweeted
another summary, thanks @biovis_net !
Next up is our first long talk of the afternoon by Jamie Huerta-Cepas (@jhcepas) on Combining programmatic visualization and interactive exploration of large phylogenetic trees using ETE toolkit (@etetoolkit) #biovis #ISMBECCB
The ETE toolkit retweeted
The ETE toolkit retweeted
Interested in building tools based on @eggnogdb and @etetoolkit for analysis and visualization of single cell RNAseq data collected from diverse marine animals? check this offer at @EMBL (Arendt's lab) in collaboration with our group at @CBGP_Madrid. embl.de/jobs/searchjobs/inde…
The ETE toolkit retweeted
The Computational Evolutionary Genomics Lab has opened Postdoctoral positions in Comparative Metagenomics and Phylogenomics compgenomics.org/jobs/
The ETE toolkit retweeted
A group in the @soltislab has been looking at the #ETE3Toolkit #Python module for manipulating and drawing phylogenetic trees. Check out my @github repo with @ProjectJupyter notebooks of the ETE3 tutorial for an intro: github.com/magitz/ETE_demo
The ETE toolkit retweeted
Two more job offers: Research Technician to work in tools such as @etetoolkit or @eggnogdb (deadline very close), and Postdoc in metagenomics/phylogenomics. Also last weeks for applying to the the PhD INPhiNIT program! Stay tuned at: compgenomics.org/jobs/ xitter.cf/jhcepas/status/9391536…
I'll be starting a Computational Genomics group at @CBGP_Madrid mid next year.If interested in #Phylogenomics and Comparative
#Metagenomics,a PhD offer w/ v/ good conditions is now available at the international #InPhINIT program: obrasociallacaixa.org/el/inv… Other positions open soon
The ETE toolkit retweeted
I'll be starting a Computational Genomics group at @CBGP_Madrid mid next year.If interested in #Phylogenomics and Comparative
#Metagenomics,a PhD offer w/ v/ good conditions is now available at the international #InPhINIT program: obrasociallacaixa.org/el/inv… Other positions open soon
The ETE toolkit retweeted
thanks to @gsoc our treeMatcher project is ready to search for your phylogenetic REGEXs github.com/etetoolkit/treema… soon available @etetoolkit
The ETE toolkit retweeted
Using @etetoolkit for phylogenomic analysis in large datasets, including @eggnogdb, @phylomedb & metagenomics under @DDDeCaF project #SMBE17
The ETE toolkit retweeted
brief intro to #reproducible phylogenetic reconstruction, analysis & #visualization using ETE tomorrow 9:15 at #SMBE17 @etetoolkit
