Sr. SW Support Scientist @10xGenomics | momma 2 cute little monsters | PhD from @ucdavisbiology in @ctitusbrown @whitehead_ja labs | opinions mine | she/her
NorCal, CA
Joined March 2015
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Excited to announce I will be (continuing) working for @10xGenomics! On the awesome software support team, answering everyone's interesting questions about our software for transcriptomics and genomics solutions!
Dr. Lisa K. Johnson retweeted
Dropping some great news this Monday! The #DisabledInSTEM Mentorship Program for 2023 is now open and will feature mentoring pods!
Mentee applications: forms.gle/VH48U9qGvpsht8vh7
Mentor applications: forms.gle/wf6a16SAaHxfsZSN7
ALT Featured is a yellow banner with greenery/leaf icons around the border. There is black text in the center that says DisabledInSTEM Mentorship Program for 2023 is now open and that applications due November 18th. In the center of the graphic on the bottom is a person wearing a white cap and green shirt with a butterfly who is holding up a magnifying glass to their eye. On the top in the center, it has the twitter bird logo and says @DisabledSTEM.
Dr. Lisa K. Johnson retweeted
hey, @Sajad_Rzv_Bazaz (: first of all, great article and exciting results, congratulations on the immense work the whole team have done!
Super proud and excited for this article @LabonaChip. Z-RISE, an innovative microchannel based on rigid material in zigzag configuration to sort cells or particles with high degree of resolution.
pubs.rsc.org/en/content/arti…
#microfluidics #cell_separation
Dr. Lisa K. Johnson retweeted
A hybrid course covering best practices for bulk and single cell RNA-seq data analysis, diytranscriptomics.com/
Dr. Lisa K. Johnson retweeted
I am excited to share the first chapter of an online, video-based R course for biologists. It is meant for beginners and focuses on data analysis of tabular data (what fits in an excel file). @Ryan_Fergusson7 and I made the videos. (1/n)
Dr. Lisa K. Johnson retweeted
Very cool new tutorial from the @10xGenomics Applications group. Trajectory Analysis using 10x Genomics Single Cell Gene Expression Data 10xgenomics.com/resources/an…
Dr. Lisa K. Johnson retweeted
Running your #singlecell assay is just the beginning. The last session in our single cell webinar series will cover what comes after the experiment—data analysis. Learn how the right tools can help you translate your data into biological insights. Sign up: bit.ly/398K48G
Dr. Lisa K. Johnson retweeted
2021 #RAForum—a free, 3 day virtual event—has sessions designed for early career researchers. Tune in for a conversation w/ Anthony Fauci @NIAIDNews & neurobiology postdoc Alexandra Colón-Rodríguez. Register: bit.ly/21ForumReg
#WomenInSTEM #FightFaster #scicomm
Dr. Lisa K. Johnson retweeted
Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries. #BioinformaticsTraining #TenSimpleRules @PLOSCompBiol
journals.plos.org/ploscompbi…
Dr. Lisa K. Johnson retweeted
Blog post: "A biotech career panel in the DIB Lab!" Dr. Marisa Lim in the lab organized a biotech career panel with @sjackman @olgabot @monsterbashseq @brooksph. You'll never guess what the panelists said! Click here to read more... ivory.idyll.org/blog/2021-bi…
Dr. Lisa K. Johnson retweeted
SO THRILLED to share this work.
First of all, thank you to my fearless coauthors Pranthi Vemuri, @saltyscientist @PhoenixLogan @saba_nafees314 and @lekha_karanam for their tireless efforts in surviving cell barcodes, Makefiles, Nextflow, and definitions of orthology. 1/20
Single-cell transcriptomics for the 99.9% of species without reference genomes biorxiv.org/cgi/content/shor… #bioRxiv
Dr. Lisa K. Johnson retweeted
Finally added an introduction to scripting page in the #Unix section of Happy Belly Bioinformatics! astrobiomike.github.io/unix/…
As with much of the site, it's intended to provide a foundation to help newcomers get up and running 🙂
Dr. Lisa K. Johnson retweeted
You should consider putting the URL for the StackOverflow page you copy-pasted code from as a comment in your code. You can then close the tab.
You will thank yourself later. <3
Dr. Lisa K. Johnson retweeted
You might check out two weeks from a course we taught last quarter. We cover r basics and then focus on dataframe manipulation, and plotting in both base R and ggplot. baylab.github.io/MarineGenom…
Dr. Lisa K. Johnson retweeted
Following up on the RNA-velocity tutorial bit.ly/2RmpTi6 from last week, we've just posted a new tutorial bit.ly/3bKBKh1 showing how to analyze CITE-seq data with alevin-fry (translating the alevin tutorial previously created by @k3yavi for the same data). 1/4
Dr. Lisa K. Johnson retweeted
All of our materials are available on this website, which we update weekly (and which looks amazing thanks to our TA @chattymaddie_ ). baylab.github.io/MarineGenom…
Dr. Lisa K. Johnson retweeted
Our review, "Streamlining Data-Intensive Biology with Workflow Systems" is now in @GigaScience
academic.oup.com/gigascience…
w/ @ReiterTaylor @brooksph @luizirber @IntrprtngGnmcs @charlesreid1bio @camille_codon @ctitusbrown
Dr. Lisa K. Johnson retweeted
GIGA announces a $2000USD Fellowship in Invertebrate Genomics to provide financial assistance for graduate students involved in invertebrate genomic research (non-insect/non-nematode). Deadline 11/13/20. Find more details here - giga-cos.org/Wordpress/inver…
Dr. Lisa K. Johnson retweeted
Pandas cookbook github.com/jvns/pandas-cookb…
Dr. Lisa K. Johnson retweeted
Our newest preprint, "Streamlining Data-Intensive Biology with Workflow Systems" is now available on bioRxiv!
biorxiv.org/content/10.1101/…
w/ @ReiterTaylor @brooksph @luizirber @IntrprtngGnmcs Charles Reid @camille_codon @ctitusbrown
Dr. Lisa K. Johnson retweeted
I put together a six-week seminar series on microbial 'omics. The purpose here is to clarify key concepts in simple, digestible terms with no practical discussions.
Details, schedule, and a registration link is here:
merenlab.org/2020/06/27/semi…