@monsterbashseq

Sr. SW Support Scientist @10xGenomics | momma 2 cute little monsters | PhD from @ucdavisbiology in @ctitusbrown @whitehead_ja labs | opinions mine | she/her

 NorCal, CA
johnsolk.github.io/blog/
Joined March 2015
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Replying to @LaurenAMichael @ctitusbrown
+1 As someone on the other end of the support tickets, "thank you!" is always appreciated! And yes, elaboration is also good because sometimes those comments get logged and can count towards promotion. :)
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Dr. Lisa K. Johnson retweeted
DisabledInSTEM@DisabledStem17 Oct 2022
Dropping some great news this Monday! The #DisabledInSTEM Mentorship Program for 2023 is now open and will feature mentoring pods! Mentee applications: forms.gle/VH48U9qGvpsht8vh7 Mentor applications: forms.gle/wf6a16SAaHxfsZSN7
Featured is a yellow banner with greenery/leaf icons around the border. There is black text in the center that says DisabledInSTEM Mentorship Program for 2023 is now open and that applications due November 18th. In the center of the graphic on the bottom is a person wearing a white cap and green shirt with a butterfly who is holding up a magnifying glass to their eye. On the top in the center, it has the twitter bird logo and says @DisabledSTEM.

ALT Featured is a yellow banner with greenery/leaf icons around the border. There is black text in the center that says DisabledInSTEM Mentorship Program for 2023 is now open and that applications due November 18th. In the center of the graphic on the bottom is a person wearing a white cap and green shirt with a butterfly who is holding up a magnifying glass to their eye. On the top in the center, it has the twitter bird logo and says @DisabledSTEM.

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Replying to @Xagecoff
Hi @Sajad_Rzv_Bazaz @warkianilab @majidew @LabonaChip , question about your paper ☝️ from an engineering student, can you please help explain the flow cytometry figures and axes units?
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Replying to @Xagecoff
cc @LabonaChip @LGMartelotto any insights?☝️
hey, @Sajad_Rzv_Bazaz (: first of all, great article and exciting results, congratulations on the immense work the whole team have done!
Sajad Razavi Bazaz@Sajad_Rzv_Bazaz7 Sep 2022
Super proud and excited for this article @LabonaChip. Z-RISE, an innovative microchannel based on rigid material in zigzag configuration to sort cells or particles with high degree of resolution. pubs.rsc.org/en/content/arti… #microfluidics #cell_separation
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Dr. Lisa K. Johnson retweeted
Ming "Tommy" Tang@tangming20057 Sep 2022
A hybrid course covering best practices for bulk and single cell RNA-seq data analysis, diytranscriptomics.com/

DIY.transcriptomics – RNAseq course.

A full course covering best practices for RNAseq data analysis, with a primary focus on empowering students to be independent in the use of lightweight and open-source software and the R/bioconductor...

diytranscriptomics.com
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I am excited to share the first chapter of an online, video-based R course for biologists. It is meant for beginners and focuses on data analysis of tabular data (what fits in an excel file). @Ryan_Fergusson7 and I made the videos. (1/n)
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Replying to @KResearchLab
Congratulations!!
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Dr. Lisa K. Johnson retweeted
Stephen Williams@SvenAT22 Mar 2022
Very cool new tutorial from the @10xGenomics Applications group. Trajectory Analysis using 10x Genomics Single Cell Gene Expression Data 10xgenomics.com/resources/an…

Trajectory Analysis using 10x Genomics Single Cell Gene Expression Data | 10x Genomics

This tutorial provides users with the instructions to import results obtained with Cell Ranger and Loupe Browser into community-developed tools for RNA velocity analysis. This analysis can be used to...

10xgenomics.com
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Dr. Lisa K. Johnson retweeted
10x Genomics
@10xGenomics28 Sep 2021
Running your #singlecell assay is just the beginning. The last session in our single cell webinar series will cover what comes after the experiment—data analysis. Learn how the right tools can help you translate your data into biological insights. Sign up: bit.ly/398K48G
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Dr. Lisa K. Johnson retweeted
ResearchAmerica
@ResearchAmerica25 Aug 2021
2021 #RAForum—a free, 3 day virtual event—has sessions designed for early career researchers. Tune in for a conversation w/ Anthony Fauci @NIAIDNews & neurobiology postdoc Alexandra Colón-Rodríguez. Register: bit.ly/21ForumReg #WomenInSTEM #FightFaster #scicomm
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Dr. Lisa K. Johnson retweeted
Javier Santoyo@jsantoyo20 Aug 2021
Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries. #BioinformaticsTraining #TenSimpleRules @PLOSCompBiol journals.plos.org/ploscompbi…

Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries

journals.plos.org
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Replying to @SapCaps
Your coral reef-themed bathtub is adorable!
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Replying to @ctitusbrown @sjackman @olgabot
Thanks for organizing and the blog post, was a fun panel! I saw this related tweet by @LizyLowe might be of interest: xitter.cf/LizyLowe/status/141519…
Dr Lizzy Lowe@LizyLowe14 Jul 2021
It's been 6 months since I made the transition from academia (postdoc) to industry (extension scientist). I know many academics are curious about this, so here's a thread of my experiences so far:
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Replying to @SapCaps
Yes, I do! She's 4 months now ☺️
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Replying to @SapCaps
Congratulations to you both! 🥰
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Dr. Lisa K. Johnson retweeted
Titus Brown@ctitusbrown20 Jul 2021
Blog post: "A biotech career panel in the DIB Lab!" Dr. Marisa Lim in the lab organized a biotech career panel with @sjackman @olgabot @monsterbashseq @brooksph. You'll never guess what the panelists said! Click here to read more... ivory.idyll.org/blog/2021-bi…
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Dr. Lisa K. Johnson retweeted
Olga Botvinnik 🇺🇦@olgabot11 Jul 2021
SO THRILLED to share this work. First of all, thank you to my fearless coauthors Pranthi Vemuri, @saltyscientist @PhoenixLogan @saba_nafees314 and @lekha_karanam for their tireless efforts in surviving cell barcodes, Makefiles, Nextflow, and definitions of orthology. 1/20
bioRxiv@biorxivpreprint11 Jul 2021
Single-cell transcriptomics for the 99.9% of species without reference genomes biorxiv.org/cgi/content/shor… #bioRxiv
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Replying to @olgabot @ArcadiaScience @seemaychou @PracheeAC
Congratulations! Sounds like a great opportunity! :)
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Dr. Lisa K. Johnson retweeted
Mike Lee@AstrobioMike17 Jun 2021
Finally added an introduction to scripting page in the #Unix section of Happy Belly Bioinformatics! astrobiomike.github.io/unix/… As with much of the site, it's intended to provide a foundation to help newcomers get up and running 🙂
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